PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 343aa    MW: 37576.9 Da    PI: 9.8084
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-61406PU_refplantGDBView CDS
gnl|UG|Sof#S17326629PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-10228272244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++W++eEd  l+ +v+++G g+W+ I ++ +   +Rtl q+  rw
        Sof001980 228 KAWSKEEDADLAAGVQKYGEGNWEDILHKCNfdSTRTLDQLSQRW 272
                      58******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-11221273IPR009057Homeodomain-like
PROSITE profilePS512949.287222280IPR017930Myb domain
SuperFamilySSF466891.94E-11224273IPR009057Homeodomain-like
SMARTSM007171.3E-5226278IPR001005SANT/Myb domain
PfamPF002491.5E-8228272IPR001005SANT/Myb domain
CDDcd116601.88E-15228272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
XAPEFPEQPK RTTAAAPPPS ADLSEMAAAA PAAGKGKRKR HLSEDDVYLL LHRYAPGTIL  60
TALQEVAQHA EGRRIDWRAV VGKSTTGITS AREYQMLWRH FAYHHDLEDS VDAGDQPLGD  120
DSDLELELEP NPIPTKEALS EASALAKALI SGSSREQASG HRINLDPPVL YTQNEKIVRV  180
PSEKQLAQSH RITNVTGAGA NSKQSSHIGP SSGHSDPNGA SKKRKKPKAW SKEEDADLAA  240
GVQKYGEGNW EDILHKCNFD STRTLDQLSQ RWALKRSGGS AKPGSTKHAS CGQKERSAAL  300
KAFSFAWRAY AENRGLLTKG FQISLPRLVL KSVKERMWGT LYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221225KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.101810.0crown| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462936.10.0hypothetical protein SORBIDRAFT_02g034880
TrEMBLC5XA310.0C5XA31_SORBI; Putative uncharacterized protein Sb02g034880
STRINGSb02g034880.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.12e-19MYB_related family protein